Bioinformatics and Biostatistics Hub

Course material

The most up-to-date version of this page should be located at http://hub-courses.pages.pasteur.fr/.

Below are free learning resources produced at Institut Pasteur¹, in particular by its team of biostatisticians and bioinformaticians.

The content of this page may be out-of-date.

Good practice / Reproducibility

• Techniques for data analysis reproducibility (version control, environments, containers, workflow managers, program development good practice): https://reproducibility.pages.pasteur.fr/teaching/pasteur_formation_repro_2021/index.html

Unix

• Introduction to Unix: http://hub-courses.pages.pasteur.fr/unix-training/

• Refresher on utilities for high-throughput sequencing data analysis (also contains material about R and Galaxy and explanations about program interfaces)

Python

• One-week course for beginners
  • Solutions to the exercises
• Older version (not up-to-date, but contains more advanced material)
  • Solutions to the exercises
• Python for data analysis

R

• First steps in R

• Data analysis using R (2016)

Material from the Introduction to data analysis PhD courses

These pages correspond to a course given to PhD students at Institut Pasteur, and deal with various topics related to statistics and data analysis for biologists. Some of them do not include course material.

The exact content may vary depending on the year:

• 2021 - 2022 (R, statistics, data analysis, possibly more, no course material)

• 2019 - 2020 (R, statistics, data analysis, possibly more)

• 2018 - 2019 (R, statistics, data analysis)

• 2017 - 2018 (R, statistics, data analysis)

• 2017 (Unix (rather detailed), R, statistics, data analysis)

Material from the Introduction to NGS data analysis course

This course about hight-throughput sequencing data analysis was given in collaboration with Institut Curie:

• 2016

Other

At the C3BI

An important part of the authors of the above course material are (or were) members of the C3BI. If you are a member of Institut Pasteur, you might be interested in live training offered by the C3BI.

At Institut Pasteur

The "Département de Biologie Computationnelle" (formerly C3BI) is part of Institut Pasteur, whose missions include education.

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